Index

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

G

g - Variable in class edu.claflin.finder.algo.clustering.Communities

g - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

generateCommunityFromLabel(int, int[], Graph) - Method in class edu.claflin.finder.algo.clustering.LabelPropagation

Performs FastGreedy community detection on a given Graph, returning the clustering with the maximum modularity.

generateNodeToModule(Map<Integer, List<Node>>) - Static method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

generateRandomOrder(List<Node>) - Method in class edu.claflin.finder.algo.clustering.LabelPropagation

Makes a random order for LPA algorithm.

generateTree(PrioritySet<HuffmanNode>) - Method in class edu.claflin.finder.algo.huffman.HuffmanCode

get(int, int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

get number at index or null if not set.

get(int, int) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Get a single element.

get(Integer) - Method in class edu.claflin.finder.algo.clustering.Communities

Get Community.

get(T) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

get(T, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

get_c1sigma() - Method in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord

get_c2sigma() - Method in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord

get_mutual_index() - Method in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord

getA() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue

getAdjacencyList(Node) - Method in class edu.claflin.finder.logic.Graph

Obtains an adjacency list for the supplied node based on the Graph.

getAdjacencyMatrix() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

getAdjacencyMatrix() - Method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm

getArray() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Access the internal two-dimensional array.

getArrayCopy() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Copy the internal two-dimensional array.

getBestBitLength() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapImplementation

getBitLength() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

getBoolean(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Gets a boolean from the booleanList.

getColumnDimension() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Get column dimension.

getColumnPackedCopy() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Make a one-dimensional column packed copy of the internal array.

getCommunities() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapImplementation

getCommunities() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

getCommunities() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorCaller

getCommunities() - Method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm

getCommunity() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue

getComponents(Graph) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorCaller

getComponents(List<Node>) - Method in class edu.claflin.finder.algo.clustering.GirvanNewman

Extracts the weak components from a graph.

getConditionsList() - Method in class edu.claflin.finder.algo.ArgumentsBundle

Gets a copy of the conditionsList that will not structurally modify the one owned by the bundle.

getConditionsList() - Method in class edu.claflin.finder.logic.ConditionedGraph

Returns an accessible list of conditions.

getConnectedComponents(Graph) - Method in class edu.claflin.finder.algo.ConnectedComponentsDFS

Gets a list of this Graph's Connected Components.

getConnectionsList() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

getD() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

Return the block diagonal eigenvalue matrix

getData() - Method in class edu.claflin.finder.logic.Edge

Access method for the Edge's data (such as weight).

getDegree() - Method in class edu.claflin.finder.logic.Node

Get the Node's in-degree.

getDegree(Node) - Method in class edu.claflin.finder.algo.clustering.Walktrap

Get the Node degree.

getDouble(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Gets a double from the doubleList.

getEdge() - Method in class edu.claflin.finder.algo.spanningtree.Prim.DistanceRecord

getEdge(int, int) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. No replacement. Obtain the edge first, then obtain the data from the Edge object.

getEdge(Node) - Method in class edu.claflin.finder.logic.Node

getEdge(Node, Node) - Method in class edu.claflin.finder.logic.Graph

Locates an Edge object in the edgeList and returns it.

getEdge(String, String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. No replacement. Obtain the edge first, then obtain the data from the Edge object.

getEdgeCount() - Method in class edu.claflin.finder.logic.Graph

Get the number of Edges in the Graph

getEdgeList() - Method in class edu.claflin.finder.logic.Graph

Returns the list of edges in the graph.

getEdges() - Method in class edu.claflin.finder.logic.Node

Get the Node's edges

getEdgesBack(List<Node>) - Method in class edu.claflin.finder.logic.Graph

Gets the list edges of this Graph that involve the nodes in the given list

getEdgeScore(Edge) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.BetweennessCentrality

getEndpoints() - Method in class edu.claflin.finder.logic.Edge

getEnum(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Gets an enum from the enumList.

getFreq() - Method in class edu.claflin.finder.algo.huffman.HuffmanNode

getFreq() - Method in class edu.claflin.finder.logic.Node

getGraph() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

getGraphList(int[], Graph) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorCaller

getGraphSortOrder() - Method in class edu.claflin.finder.algo.Algorithm

getGraphWeight() - Method in class edu.claflin.finder.logic.Graph

Get the Graph's total weight (sum of all edge weights)

getGroupModMatrix(int) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

getGroupVector(double[][]) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

getHeight() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

getHeight(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

getI() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapNode

getIdentifier() - Method in class edu.claflin.finder.logic.Node

Access method for the Node's identifier.

getImagEigenvalues() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

Return the imaginary parts of the eigenvalues

getIndex() - Method in class edu.claflin.finder.algo.clustering.struct.TreeNodeInfo

getIndex() - Method in class edu.claflin.finder.algo.spanningtree.Prim.DistanceRecord

getIndex1() - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT

getIndex2() - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT

getInfo() - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode

getInteger(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Gets an integer from the integerList.

getIntegerIdentifier() - Method in class edu.claflin.finder.logic.Node

Get the index of the Node in its Graph's Node list.

getJ() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG

getLeft() - Method in class edu.claflin.finder.algo.huffman.HuffmanNode

getLeftChild() - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode

Get the left child TreeNode.

getList() - Method in class edu.claflin.finder.algo.clustering.Communities

Get Community structure as a List of Node Lists.

getLogger() - Static method in class edu.claflin.finder.Global

Gets the logger.

getM2() - Method in class edu.claflin.finder.algo.clustering.Communities

getMatrix(int[], int[]) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Get a submatrix.

getMatrix(int[], int, int) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Get a submatrix.

getMatrix(int, int, int[]) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Get a submatrix.

getMatrix(int, int, int, int) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Get a submatrix.

getMax() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

getMax(int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

Get the maximum q value at row i

getMax(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

getMembers() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.ModuleNode

getMin() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

getMin(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

getMinNodeCount() - Method in class edu.claflin.finder.algo.Algorithm

getModularityDelta(int, int, int) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

getModularityMatrix() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

getModularityScore(double[][], int[]) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

getName() - Method in class edu.claflin.finder.algo.huffman.HuffmanNode

getName() - Method in class edu.claflin.finder.logic.Graph

Gets the name of the graph.

getName(Graph, String, List<Edge>) - Method in class edu.claflin.finder.algo.spanningtree.ExtremumSpanningTree

getNeighbors() - Method in class edu.claflin.finder.logic.Node

Get the Node's neighbors

getNode(String) - Method in class edu.claflin.finder.logic.Graph

Gets a node based on its name.

getNodeCount() - Method in class edu.claflin.finder.logic.Graph

Gets the number of nodes in the graph.

getNodeEdges(Node) - Method in class edu.claflin.finder.logic.Graph

Get the list of Edges in which the given Node participates.

getNodeIndex(Node) - Method in class edu.claflin.finder.logic.Graph

Gets the index of a Node object in memory.

getNodeIndex(String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

getNodeList() - Method in class edu.claflin.finder.logic.Graph

Returns the list of nodes in the graph.

getNodeModule(Node) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapImplementation

getNodeName(int) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. No replacement. Obtain the Node data via the Node object.

getObject(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Gets an object from the enumList.

getOppositeGroup() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

getOther(Node) - Method in class edu.claflin.finder.logic.Edge

getOutput() - Static method in class edu.claflin.finder.Global

Gets the output directory for storing results.

getPartiteNumber() - Method in class edu.claflin.finder.algo.Algorithm

getPartiteNumber() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

getPartiteSets() - Method in class edu.claflin.finder.logic.Graph

Divides the given graph into two bipartite sets.

getQ() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG

getRealEigenvalues() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

Return the real parts of the eigenvalues

getRight() - Method in class edu.claflin.finder.algo.huffman.HuffmanNode

getRightChild() - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode

Get the right child TreeNode.

getRowDimension() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Get row dimension.

getRowPackedCopy() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Make a one-dimensional row packed copy of the internal array.

getSingleton() - Static method in class edu.claflin.finder.logic.cygrouper.Communicator

getSource() - Method in class edu.claflin.finder.logic.Edge

Access method for the Edge's source.

getSubGraph(int, int, String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by Graph.getSubGraph(java.util.List, java.lang.String)

getSubGraph(ArrayList<String>, String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by Graph.getSubGraph(java.util.List, java.lang.String)

getSubGraph(List<Node>, String) - Method in class edu.claflin.finder.logic.Graph

Returns a subGraph of this graph.

getTarget() - Method in class edu.claflin.finder.logic.Edge

Access method for the Edge's target.

getTree() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler

getV() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

Return the eigenvector matrix

getVal(T) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

getValue() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.TreeNodeInfoFG

getValue() - Method in class edu.claflin.finder.algo.clustering.struct.TreeNodeInfo

getValue() - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT

getVertexScore(Node) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.BetweennessCentrality

getWeight() - Method in class edu.claflin.finder.logic.Node

Get the Node's weight

getWeight(Node) - Method in class edu.claflin.finder.algo.clustering.Walktrap

Get the Node weight.

getWeight(List<Edge>) - Method in class edu.claflin.finder.algo.shortestpath.DijkstraShortestPath

getWeightName() - Method in class edu.claflin.finder.algo.Algorithm

GirvanNewman - Class in edu.claflin.finder.algo.clustering

Girvan-Newman Algorithm for Community Detection.

GirvanNewman(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.clustering.GirvanNewman

Global - Class in edu.claflin.finder

Holds "Global" data that needs to be accessed by multiple parts of the program.

Global() - Constructor for class edu.claflin.finder.Global

Private constructor for preventing instantiation of the class.

graph - Variable in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.BetweennessCentrality

graph - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

graph - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapAlgorithm

graph - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

graph - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorCaller

graph - Static variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester

graph - Variable in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm

Graph - Class in edu.claflin.finder.logic

Used to represent a graph in memory.

Graph(String) - Constructor for class edu.claflin.finder.logic.Graph

Initializes the graph.

Graph(String, List<Node>, List<Edge>) - Constructor for class edu.claflin.finder.logic.Graph

Private constructor used by subGraph method.

GraphAverageWeightComparator - Class in edu.claflin.finder.logic.comp

GraphAverageWeightComparator() - Constructor for class edu.claflin.finder.logic.comp.GraphAverageWeightComparator

graphName - Variable in class edu.claflin.finder.logic.Graph

The name of the Graph provided by the user.

GraphReader - Interface in edu.claflin.finder.io.graph.sub

Interface used for classes designed to read graphs from memory.

GraphSizeComparator - Class in edu.claflin.finder.logic.comp

GraphSizeComparator(boolean) - Constructor for class edu.claflin.finder.logic.comp.GraphSizeComparator

GraphSortOrder() - Constructor for enum edu.claflin.finder.algo.Algorithm.GraphSortOrder

GraphWriter - Interface in edu.claflin.finder.io.graph.sub

Interface used by classes that write graphs to memory.

greatestPowerOf2LessThanN(int) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

.

group - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperNode

GroupData(int, ArrayList<Integer>) - Constructor for class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm.GroupData

groupLabel - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

groupLabel - Variable in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm.GroupData

groupMap - Variable in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm

groupMapToString(HashMap<Integer, ArrayList<Integer>>, Graph) - Static method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester

groups - Static variable in class edu.claflin.finder.logic.cygrouper.Communicator

groupsToString(int[]) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester

groupToString(int[], int) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester

groupToString(int[], int, Graph) - Static method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester

groupToString(HashMap<Integer, ArrayList<Integer>>, int, Graph) - Static method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester

groupVector - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

groupVector - Variable in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm

GRPH - Enum constant in enum edu.claflin.finder.log.LogType

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form